Mathematical Frameworks for Integrative Analysis of Emerging Biological Data Types (Online)
Videos from BIRS Workshop
Guocheng Yuan, Dana-Farber Cancer Institute
Monday Jun 15, 2020 05:30 - 06:24
Keynote Talk (Cortex seq-FISH study)
Alexis Coullomb, INSERM
Monday Jun 15, 2020 07:00 - 07:21
CORTEX seq-FISH: clustering
Hang Xu, Stanford Cancer Institute
Monday Jun 15, 2020 07:21 - 07:38
CORTEX seq-FISH: selection of spatial coherent genes
Dario Righelli, Department of Statistics, University of Padua
Monday Jun 15, 2020 07:39 - 07:55
CORTEX seq-FISH: software structure and data integration
Amrit Singh, University of British Columbia
Monday Jun 15, 2020 08:21 - 08:40
CORTEX seq-FISH: integration with scRNA-seq data
Joshua Sodicoff, University of Michigan Medical School
Monday Jun 15, 2020 08:41 - 09:00
CORTEX seq-FISH: integration with scRNA-seq data
Yingxin Lin, Yale University
Tuesday Jun 16, 2020 07:00 - 07:20
sc targeted proteomics: Predicting outcome, survival from 3 proteomics datasets (Keren, Jackson, Wagner)
Chen Meng, BayBioMS TU Munich
Tuesday Jun 16, 2020 07:20 - 07:36
sc targeted proteomics: comparing multi-block PCA, linear regression
Pratheepa Jeganathan, Standford University
Tuesday Jun 16, 2020 07:36 - 07:51
sc targeted proteomics:Stan model for latent Dirichlet allocation
Kris Sankaran, Quebec AI Institute
Tuesday Jun 16, 2020 07:51 - 08:05
sc targeted proteomics: spatial analysis
Duncan Forster, University of Toronto
Tuesday Jun 16, 2020 08:40 - 09:00
Networks - learning salient gene and protein features from network topologies.
Oliver Stegle, German Cancer Research Centre & EMBL
Wednesday Jun 17, 2020 05:32 - 06:32
Keynote Talk (scNMT-seq study)
Al Abadi, The University of Melbourne
Wednesday Jun 17, 2020 07:00 - 07:21
scNMT-seq: multivariate integrative analyses
Joshua Welch, University of Michigan
Wednesday Jun 17, 2020 07:21 - 07:40
scNMT-seq: LIGER
Arshi Arora, Memorial Sloan Kettering Cancer Center
Wednesday Jun 17, 2020 07:41 - 07:59
scNMT-seq:MOSAIC, or Multi-Omic Supervised Integrative Clustering
Wouter Meuleman, Altius Institute for Biomedical Sciences
Wednesday Jun 17, 2020 08:10 - 08:31
DNase-seq data as a scaffold for complementary (single cell) datasets
Susan Holmes, Stanford University
Thursday Jun 18, 2020 06:01 - 07:02
Keynote Talk: Computational Challenges
Michael Love, UNC-Chapel Hill
Thursday Jun 18, 2020 07:30 - 08:02
Benchmarking
Casey Greene, University of Pennsylvania
Thursday Jun 18, 2020 08:03 - 08:13
Writing with Manubot
Vincent Carey, Channing Division of Network Medicine, Brigham and Women's Hospital, Harvard Medical School
Friday Jun 19, 2020 06:02 - 07:00
Software Infastructure
