Schedule for: 25w5391 - Spatial Omics - Integrating Biotechnologies, Methodologies and Applications
Beginning on Sunday, June 15 and ending Friday June 20, 2025
All times in Hangzhou, China time, CST (UTC+8).
| Sunday, June 15 | |
|---|---|
| 14:00 - 18:00 | Check-in begins at 14:00 on Sunday and is open 24 hours (Front desk - Yuxianghu Hotel（御湘湖酒店前台)) |
| 18:00 - 20:00 |
Dinner ↓ A set dinner is served daily between 5:30pm and 7:30pm in the Xianghu Lake National Tourist Resort. (Restaurant - Yuxianghu Hotel（御湘湖酒店餐厅)) |
| Monday, June 16 | |
|---|---|
| 07:00 - 09:00 |
Breakfast ↓ Breakfast is served daily between 7 and 9am in the Xianghu Lake National Tourist Resort (Restaurant - Yuxianghu Hotel（御湘湖酒店餐厅)) |
| 09:25 - 09:30 | Opening Remarks by Workshop Organizers (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 09:35 - 09:45 | Day 1 - Spatial technology and translation (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 09:50 - 10:05 | Ge Gao: Delineate the regulatory map in silico (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 10:10 - 10:25 | Shihua Zhang: Intelligent decoding of spatial biology (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 10:30 - 11:00 | Coffee Break (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 11:00 - 11:15 | Jinyue LIU: Spatial architecture of autism pathogenesis during early development (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 11:20 - 11:35 | Corina Nagy: Cortical Architecture and Cell-Cell Communication in Major Depressive Disorder (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 11:35 - 11:50 | Joan Camunas-Soler: Integrative high-resolution spatial transcriptomics and functional imaging in the human pancreas (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 12:00 - 14:00 |
Lunch ↓ Lunch is served daily between 11:30am and 1:30pm in the Xianghu Lake National Tourist Resort (Dining Hall - Academic island（定山院士岛餐厅)) |
| 14:00 - 14:15 | Pingzhao Hu: PathoMap: Predicting Spatial Gene Expression from Histology via Foundation Model-Based Contrastive Learning (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 14:20 - 14:30 | Jiadong Mao: Identifying complex cell states in tumour microenvironment using Φ-Space (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 14:40 - 14:55 | Hanyun Zhang: Mapping tumour microenvironment dynamics during chemotherapy in breast cancer (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 15:00 - 15:30 | Coffee Break (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 15:30 - 15:45 | Jean Yee Hwa Yang: Extracting single-cell transcriptomic information via prediction from histology images. (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 15:50 - 16:05 | Yuanhua Huang: Scalable discovery of nucleus-resolved ligand-receptor interaction by fusing spatial RNA-seq and histology images (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 16:10 - 16:25 | Coffee Break (soft drink only) (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 16:30 - 16:45 | Mingyao Li: Designing smart spatial omics experiments with S2Omics (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 16:50 - 17:30 |
Panel discussion -translational challenges of spatial omics with complex diseases ↓ Co-chair by Jean Yang and Lijia Yu (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 18:00 - 20:00 | Dinner (Restaurant - Yuxianghu Hotel（御湘湖酒店餐厅)) |
| Tuesday, June 17 | |
|---|---|
| 07:00 - 09:00 |
Breakfast ↓ Breakfast is served daily between 7 and 9am in the Xianghu Lake National Tourist Resort (Restaurant - Yuxianghu Hotel（御湘湖酒店餐厅)) |
| 09:25 - 09:40 | Day 2 - Spatial Biology and multiomics (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 09:30 - 09:45 | Sunduz Keles: Learning spatially varying gene-enhancer interactions from spatial multi-modal data (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 09:50 - 10:05 | Jin Liu: From static to dynamic modeling of single-cell/spatial transcriptomics (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 10:10 - 10:25 | Xuerui Yang: Dissection of the dynamic landscapes of RNA colocalization with spatial transcriptome data (Front desk - Yuxianghu Hotel（御湘湖酒店前台)) |
| 10:30 - 11:00 | Coffee Break (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 11:00 - 11:05 | Boxiang Liu: Single-cell RNA sequencing of peripheral blood links cell-type-specific regulation of splicing to autoimmune and inflammatory diseases (Front desk - Yuxianghu Hotel（御湘湖酒店前台)) |
| 11:20 - 11:35 | Ying Zhu: Decoding Gene Functions: Exploring their Significance in Biological Context (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 11:40 - 11:55 | Zhixiang Lin: Integrative Analysis and Regulatory Inference for Spatial Multi-Omics Data (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 12:00 - 14:00 | Lunch (Dining Hall - Academic island（定山院士岛餐厅)) |
| 14:00 - 14:50 |
Discussion (debate) - challenges of Spatial multi-omics data integration ↓ Co-Chair by Angela Wu and Ellis Patrick (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 14:50 - 15:20 | Coffee Break (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 15:20 - 15:35 | Mark Robinson: Extracting and cross-condition modeling of spatial features from spatial omics data (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 15:40 - 15:55 | Ellis Patrick: Making Space Count: Strategies for Analysing Spatial Omics Data (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 16:05 - 16:15 | Zhenqin Wu: Spatial multi-omics and deep learning reveal immunotherapy resistance signatures in hepatocellular carcinoma (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 16:20 - 16:30 | Coffee Break (soft drink only) (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 16:30 - 16:45 | Angela Wu (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 16:50 - 17:05 | Catherine Wong: Biomarker-Driven Proteomics in Drug Discovery (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 17:10 - 17:25 | Jun Ding: UNAGI: A deep generative model for deciphering cellular dynamics and in-silico drug screening in complex diseases (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 17:45 - 18:00 | Group Photo (Academic island（定山院士岛)) |
| 18:00 - 20:00 | Dinner (Restaurant - Yuxianghu Hotel（御湘湖酒店餐厅)) |
| Wednesday, June 18 | |
|---|---|
| 07:00 - 09:00 | Breakfast (Restaurant - Yuxianghu Hotel（御湘湖酒店餐厅)) |
| 09:25 - 09:30 | Day 3 - Spatial omics and AI (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 09:30 - 09:45 | Xuegong Zhang: Building AI Models for Learning Cellular Spatial Contexts (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 09:50 - 10:05 | Yue Li: Inferring spatially informed transcriptional programs via topic modeling (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 10:10 - 10:25 | Shuangsang Fang: Research on Spatiotemporal Single-Cell Omics Algorithms and Cell Foundation Models (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 10:30 - 11:00 | Coffee Break (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 11:00 - 11:15 | Shimin Shuai: Leveraging Single-Cell and Spatial Omics for Microbial Detection and RNA Editing Discovery (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 11:20 - 11:35 |
Yue You: A systematic comparison of single-cell perturbation response prediction models. ↓ Change to Yue You (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 11:40 - 11:55 | Matthew Ritchie: SpatialBenchHiRe: Comparative benchmarking of high-resolution spatial transcriptomics platforms using reference samples (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 12:00 - 13:30 | Lunch (Dining Hall - Academic island（定山院士岛餐厅)) |
| 13:30 - 18:00 | Free afternoon (Academic island（定山院士岛)) |
| 18:00 - 20:00 | Dinner (Restaurant - Yuxianghu Hotel（御湘湖酒店餐厅)) |
| Thursday, June 19 | |
|---|---|
| 07:00 - 09:00 | Breakfast (Restaurant - Yuxianghu Hotel（御湘湖酒店餐厅)) |
| 09:25 - 09:30 | Day 4 - more spatial omics (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 09:30 - 09:45 | Xingming Zhao: Spatiotemporal transcriptome atlas of the developing human retina (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 09:50 - 10:05 | Guanlin Wang: SURF: a self-supervised deep learning method for reference-free deconvolution in spatial transcriptomics (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 10:10 - 10:25 | Jiguang Wang: Immnue-hot subtype of IDH mutant astrocytoma (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 10:30 - 11:00 | Coffee Break (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 11:00 - 11:15 | Shuqin Zhang: Cell-type annotation and missing gene imputation for single-cell spatial transcriptomics using stAI (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 11:20 - 11:35 | Yingying Wei: Differential Inference for Spatial Transcriptomic Data (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 11:40 - 11:55 | Agus Salim: SpaNorm: spatially-aware normalisation for spatial transcriptomics data (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 12:00 - 14:00 | Lunch (Dining Hall - Academic island（定山院士岛餐厅)) |
| 14:00 - 15:00 |
Panel discussion on education and AI - data science with omics data ↓ Data science with spatiotemporal omics data (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 15:00 - 15:30 | Coffee Break (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 15:30 - 15:45 | Peijie Zhou: Towards AI Virtual Cell Through Dynamical Generative Modeling of Single-cell Omics Data (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 15:50 - 16:05 | David Shih: Towards a biologically relevant statistical framework for gene regulatory network inference (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 16:10 - 16:25 | Coffee Break (soft drink only) (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 16:30 - 16:45 | Gerald Quon (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 16:50 - 17:05 | Jian Ma: Multiscale delineation of cellular organizations in tissues (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 18:00 - 20:00 | Dinner (Restaurant - Yuxianghu Hotel（御湘湖酒店餐厅)) |
| Friday, June 20 | |
|---|---|
| 07:00 - 09:00 | Breakfast (Restaurant - Yuxianghu Hotel（御湘湖酒店餐厅)) |
| 09:30 - 09:40 | Day 5 - Future of spatial omics (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 09:40 - 09:55 | Can Yang: A Scalable and Versatile Tool for Analyzing Subcellular Spatial Transcriptomics Data (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 10:00 - 10:15 | Zhana Duren: Integrated Spatial Omics Network from spatial transcriptomics and single cell multiome data (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 10:20 - 10:50 | Coffee Break (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 10:50 - 11:20 | ECR Flash talks (Zoom (Online)) |
| 11:20 - 12:00 |
Open discussion - going forward ↓ Exploring the tissue architecture with three-dimensional (3D) spatial omics (Lecture Hall - Academic island（定山院士岛报告厅)) |
| 12:00 - 13:30 | Lunch (Dining Hall - Academic island（定山院士岛餐厅)) |
