Schedule for: 23w5152 - Computational Biology meets Data Science
Beginning on Sunday, May 7 and ending Friday May 12, 2023
All times in Oaxaca, Mexico time, CDT (UTC-5).
| Sunday, May 7 | |
|---|---|
| 14:00 - 23:59 | Check-in begins (Front desk at your assigned hotel) |
| 19:30 - 20:30 | Dinner (Restaurant Hotel Hacienda Los Laureles) |
| 20:30 - 21:30 | Informal gathering (Hotel Hacienda Los Laureles) |
| Monday, May 8 | |
|---|---|
| 07:30 - 09:00 | Breakfast (Restaurant Hotel Hacienda Los Laureles) |
| 09:00 - 09:15 | Introduction and Welcome (Conference Room San Felipe) |
| 09:15 - 10:00 | Robert Gentleman: Spatial transcriptomics (Hotel Hacienda Los Laureles) |
| 10:00 - 10:30 | Celia Greenwood: "Modelling covariate and SNP influences on DNA methylation data" (Hotel Hacienda Los Laureles) |
| 10:30 - 11:00 | Coffee Break (Conference Room San Felipe) |
| 11:00 - 11:30 | Maria Chikina: "Mixture deconvolution: a new perspective on an old problem" (Hotel Hacienda Los Laureles) |
| 11:30 - 12:00 | Sandrine Dudoit: "Learning from Data in Single-Cell Transcriptomics" (Hotel Hacienda Los Laureles) |
| 12:00 - 12:30 | Gerald Quon: "DNA sequence models for predicting single cell expression" (Hotel Hacienda Los Laureles) |
| 12:30 - 13:00 | Fabien Plisson: “Auditing for structural bias in machine-learning peptide design” (Hotel Hacienda Los Laureles) |
| 13:00 - 13:20 | Discussion (Hotel Hacienda Los Laureles) |
| 13:20 - 13:30 | Group Photo (Hotel Hacienda Los Laureles) |
| 13:30 - 15:00 | Lunch (Restaurant Hotel Hacienda Los Laureles) |
| 15:00 - 15:30 | Ingo Ruczinski: "Detecting And Quantifying Antibody Reactivity In Phip-Seq Data" (Hotel Hacienda Los Laureles) |
| 15:30 - 16:00 | Richard Bonneau: "Applying lessons from protein structure and function prediction to multi-modal drug discovery" (Hotel Hacienda Los Laureles) |
| 16:00 - 16:30 | Coffee Break (Conference Room San Felipe) |
| 16:30 - 17:00 | Discussion (Hotel Hacienda Los Laureles) |
| 17:00 - 18:00 | Career Forum (Hotel Hacienda Los Laureles) |
| 18:00 - 19:00 | Project Proposals (Hotel Hacienda Los Laureles) |
| 19:00 - 21:00 | Dinner (Restaurant Hotel Hacienda Los Laureles) |
| Tuesday, May 9 | |
|---|---|
| 07:30 - 09:00 | Breakfast (Restaurant Hotel Hacienda Los Laureles) |
| 09:00 - 09:30 | Katya Rodriguez-Vazquez: "Bio-inspired Algorithms in Biology" (Hotel Hacienda Los Laureles) |
| 09:30 - 10:00 | Anthony-Alexander Christidis: "Robust Multi-Model Subset Selection" (Hotel Hacienda Los Laureles) |
| 10:00 - 10:30 | Kat Clark: "Trimming Outliers in Matrix-Variate Normal Mixtures using the OCLUST Algorithm" (Hotel Hacienda Los Laureles) |
| 10:30 - 11:00 | Coffee Break (Conference Room San Felipe) |
| 11:00 - 11:30 | Jason Xu: "Learning hierarchical covariance structure from multiple studies via subspace factor analysis" (Hotel Hacienda Los Laureles) |
| 11:30 - 12:00 | Clara Bermudez: "What would we discover about viruses secrets if the computation attacks them?" (Hotel Hacienda Los Laureles) |
| 12:00 - 12:30 | Natasa Tagasovska: "Tailored Multiobjective Optimization and Sampling for Molecular Design" (Hotel Hacienda Los Laureles) |
| 12:30 - 13:30 | Free time (Oaxaca) |
| 13:30 - 15:00 | Lunch (Restaurant Hotel Hacienda Los Laureles) |
| 15:30 - 16:00 | Iuliana Ionita-Laza: "Knockoff-based statistics in genetics: opportunities and challenges” (Hotel Hacienda Los Laureles) |
| 16:00 - 16:30 | Coffee Break (Conference Room San Felipe) |
| 16:30 - 17:00 | Pei Wang: iProMix: A mixture model for studying the function of ACE2 based on bulk proteogenomic data (Hotel Hacienda Los Laureles) |
| 17:00 - 17:30 | Amilcar Meneses: "Towards a replacement for glyphosate as a pesticide using data minig and artificial intelligence" (Hotel Hacienda Los Laureles) |
| 17:30 - 19:00 | Project Work (Hotel Hacienda Los Laureles) |
| 19:00 - 21:00 | Dinner (Restaurant Hotel Hacienda Los Laureles) |
| Wednesday, May 10 | |
|---|---|
| 07:30 - 09:00 | Breakfast (Restaurant at your assigned hotel) |
| 09:00 - 09:30 | Javier De Las Rivas: "Multivariate logistic regression, survival analysis and other algorithms applied to the study of genomic and clinical data from cancer patients" (Hotel Hacienda Los Laureles) |
| 09:30 - 10:00 | Hector Corrada Bravo: "The Single Cell Hub at Genentech: how to manage and query data for 130M cells" (Hotel Hacienda Los Laureles) |
| 10:30 - 11:00 | Coffee Break (Hotel Hacienda Los Laureles) |
| 11:00 - 11:30 | Ali Yazbeck: "Integrating germline and somatic genetic profiles through machine learning to understand cancer etiology" (Hotel Hacienda Los Laureles) |
| 11:30 - 12:00 | Katia Aviña Padilla: “A multiomics approach to identify potential driver genes in cancer diseases” (Hotel Hacienda Los Laureles) |
| 12:00 - 13:00 | Lunch (Restaurant Hotel Hacienda Los Laureles) |
| 13:00 - 17:00 | Free Afternoon (Monte Albán Tour) (Oaxaca) |
| 19:00 - 21:00 | Dinner (Restaurant Hotel Hacienda Los Laureles) |
| Thursday, May 11 | |
|---|---|
| 07:30 - 09:00 | Breakfast (Restaurant Hotel Hacienda Los Laureles) |
| 09:00 - 10:30 | Project Work (Hotel Hacienda Los Laureles) |
| 10:30 - 11:00 | Coffee Break (Conference Room San Felipe) |
| 11:00 - 11:30 | Laxmi Parida: "Topology and Logic in Life Sciences" (Hotel Hacienda Los Laureles) |
| 11:30 - 12:00 | Jessica Dennis: "Genetic epidemiology in the era of big data, biobanks, and -omic technologies" (Hotel Hacienda Los Laureles) |
| 12:00 - 12:30 | Mashaal Sohail: "Nationwide Genomic Biobank in Mexico Unravels Demographic History and Complex Trait Architecture from 6,057 Individuals" (Hotel Hacienda Los Laureles) |
| 13:00 - 13:30 | César Díaz: "Evomining as a tool to clusterize metagenomes" (Hotel Hacienda Los Laureles) |
| 13:30 - 15:00 | Lunch (Restaurant Hotel Hacienda Los Laureles) |
| 15:00 - 15:30 | Nelly Selem: MicroAgrobiome - a comparative metagenomics platform applied to hunt genera in the crop microbiome (Hotel Hacienda Los Laureles) |
| 15:30 - 16:00 | Deisy Gysi: "Network Medicine, Disease Module (in)completeness and other tales" (Hotel Hacienda Los Laureles) |
| 16:00 - 16:30 | Coffee Break (Conference Room San Felipe) |
| 16:00 - 18:30 | Project Presentations (Hotel Hacienda Los Laureles) |
| 19:00 - 21:00 | Dinner (Oaxaca) |
| Friday, May 12 | |
|---|---|
| 07:30 - 09:00 | Breakfast (Restaurant Hotel Hacienda Los Laureles) |
| 09:00 - 10:30 | Discussion (Hotel Hacienda Los Laureles) |
| 10:30 - 11:00 | Coffee Break (Conference Room San Felipe) |
| 11:00 - 13:00 | Discussion (Hotel Hacienda Los Laureles) |
| 13:00 - 13:30 | Closing Remarks (Hotel Hacienda Los Laureles) |
| 13:30 - 15:00 | Lunch (Restaurant Hotel Hacienda Los Laureles) |
