Schedule for: 17w5134 - Challenges and Synergies in the Analysis of Large-Scale Population-Based Biomedical Data
Beginning on Sunday, November 26 and ending Friday December 1, 2017
All times in Oaxaca, Mexico time, CST (UTC-6).
| Sunday, November 26 | |
|---|---|
| 14:00 - 23:59 | Check-in begins (Front desk at your assigned hotel) |
| 19:30 - 22:00 | Dinner (Restaurant Hotel Hacienda Los Laureles) |
| 20:30 - 21:30 | Informal gathering (Hotel Hacienda Los Laureles) |
| Monday, November 27 | |
|---|---|
| 07:30 - 08:45 | Breakfast (Restaurant at your assigned hotel) |
| 08:45 - 09:00 | Introduction and Welcome (Conference Room San Felipe) |
| 09:00 - 09:30 | Elham Azizi: Bayesian Inference of Cell Type-Specific Gene Regulatory Networks (Conference Room San Felipe) |
| 09:30 - 10:00 | Smita Krishnaswamy: Manifold-Learning Frameworks for Extracting Structure from High-throughput Single-Cell Datasets (Conference Room San Felipe) |
| 10:00 - 10:30 | Itsik Pe'er: Latent-space temporal models for microbiome population dynamics (Conference Room San Felipe) |
| 10:30 - 11:00 | Coffee Break (Conference Room San Felipe) |
| 11:00 - 11:30 | Cei Abreu-Goodger: An extracellular RNA interference pathway as a mechanism of parasite-host communication. (Conference Room San Felipe) |
| 11:30 - 12:00 | Hamed Najafabadi: Inference of mRNA stability from RNA-sequencing (Conference Room San Felipe) |
| 12:00 - 12:20 | Ritambhara Singh: Attend and Predict: Understanding Gene Regulation by Selective Attention on Chromatin (Conference Room San Felipe) |
| 12:20 - 12:40 | Group Photo (Hotel Hacienda Los Laureles) |
| 12:40 - 14:50 | Lunch (Restaurant Hotel Hacienda Los Laureles) |
| 14:50 - 15:20 | Selene Lizbeth Fernandez-Valverde: Early evolution of gene regulation in the animal kingdom (Conference Room San Felipe) |
| 15:20 - 15:40 | Sam Lambert: Extensive divergence of eukaryotic transcription factor sequence specificity (Conference Room San Felipe) |
| 15:40 - 16:00 | Laura Campitelli: Reconstructing the evolutionary history of endogenous retroelements (Conference Room San Felipe) |
| 16:00 - 16:30 | Coffee Break (Conference Room San Felipe) |
| 16:30 - 17:00 | Debora Marks: Learning the Secrets of Sequences with Variational Autoencoders (Conference Room San Felipe) |
| 17:00 - 17:20 | Perry Palmedo: Enhancing Evolutionary Couplings with Deep Convolutional Neural Networks (Conference Room San Felipe) |
| 17:20 - 17:50 | Max Leiserson: A Multi-Species Functional Embedding Integrating Sequence and Network Structure (Conference Room San Felipe) |
| 18:10 - 19:00 | Free time (Conference Room San Felipe) |
| 19:00 - 21:00 | Dinner (Restaurant Hotel Hacienda Los Laureles) |
| Tuesday, November 28 | |
|---|---|
| 07:30 - 09:00 | Breakfast (Restaurant at your assigned hotel) |
| 09:00 - 09:30 | Peter Van Loo: Molecular archaeology of cancer (Conference Room San Felipe) |
| 09:30 - 10:00 | David Wedge: Cancer evolution: Order matters (Conference Room San Felipe) |
| 10:00 - 10:30 | Wenyi Wang: Robust subclonal architecture reconstruction from ~2,700 cancer genomes (Conference Room San Felipe) |
| 10:30 - 11:00 | Coffee Break (Conference Room San Felipe) |
| 11:30 - 12:00 | Jonas Demeulemeester: Catastropic events in tumour evolution: chromothripsis, chromoplexy and kataegis (Conference Room San Felipe) |
| 12:00 - 12:20 | Jeff Wintersinger: Why don't tumour copy number reconstruction methods agree? (Conference Room San Felipe) |
| 12:20 - 12:40 | Tyler Funnell: Integrative analysis of point mutation and structural variation signatures in human cancer genomes (Conference Room San Felipe) |
| 12:40 - 15:00 | Lunch (Restaurant Hotel Hacienda Los Laureles) |
| 15:00 - 15:30 | Shamil Sunyaev: Mutation and selection in cancer (Conference Room San Felipe) |
| 15:30 - 16:00 | Quaid Morris: Reconstructing cancer phylogenies from pairwise relationships among mutations. (Conference Room San Felipe) |
| 16:00 - 16:30 | Coffee Break (Conference Room San Felipe) |
| 16:30 - 17:00 | David Gresham: Real time tracking of CNVs in evolving populations (Conference Room San Felipe) |
| 17:00 - 17:30 | Michael Hallett: Detecting molecular interactions between tissues in breast cancer (Conference Room San Felipe) |
| 17:30 - 18:00 | Luis Alberto Cantera: On the Global Dynamics of Mathematical Models and Orthogonal Fitting (Conference Room San Felipe) |
| 18:00 - 19:00 | Free Time (Conference Room San Felipe) |
| 19:00 - 21:00 | Dinner (Restaurant Hotel Hacienda Los Laureles) |
| Wednesday, November 29 | |
|---|---|
| 07:30 - 09:00 | Breakfast (Restaurant at your assigned hotel) |
| 09:00 - 09:30 | Celia Greenwood: A general framework for variable selection in linear mixed models, with applications to genetic studies with structured populations (Conference Room San Felipe) |
| 09:30 - 10:00 | David Balding: Genome-wide models for heritability and prediction (Conference Room San Felipe) |
| 10:00 - 10:30 | Eran Halperin: Sparse PCA with applications in methylation analysis (Conference Room San Felipe) |
| 10:30 - 11:00 | Coffee Break (Conference Room San Felipe) |
| 11:00 - 11:30 | Noah Zaitlen: Phenotypic heterogeneity within and between populations (Conference Room San Felipe) |
| 11:30 - 12:00 | Gil McVean: Mapping the genetic structure of pleiotropy from routine healthcare data (Conference Room San Felipe) |
| 12:00 - 12:30 | Simon Gravel: Genomics like it’s 1960: revisiting classical models with modern data (Conference Room San Felipe) |
| 12:45 - 14:30 | Lunch (Restaurant Hotel Hacienda Los Laureles) |
| 14:30 - 15:00 | John Ingraham: Learning the sequence to structure map (Conference Room San Felipe) |
| 15:00 - 15:30 | Adrian Cortes: Genetic association analysis across tree-structure routine healthcare data (Conference Room San Felipe) |
| 15:30 - 16:00 | Barbara Engelhardt: Two sample Bayesian covariance test (Conference Room San Felipe) |
| 16:00 - 16:30 | Coffee Break (Conference Room San Felipe) |
| 16:30 - 17:00 | Adam Siepel: New methods for measuring natural selection and predicting deleterious variants in noncoding regions of the human genome (Conference Room San Felipe) |
| 17:00 - 17:30 | Francesco Paolo Casale: Mixed model approaches to study complex gene-environment interactions (Conference Room San Felipe) |
| 17:30 - 18:00 | Lourdes Peña Castillo: Sub-group discovery associated with commorbidities in Type 1 Diabetes. (Conference Room San Felipe) |
| 18:00 - 19:00 | Free Time (Conference Room San Felipe) |
| 19:00 - 21:00 | Dinner (Restaurant Hotel Hacienda Los Laureles) |
| Thursday, November 30 | |
|---|---|
| 07:30 - 09:00 | Breakfast (Restaurant at your assigned hotel) |
| 09:00 - 09:30 |
Jennifer Listgarten: CRISPR guide design with ML ↓ TBD (Conference Room San Felipe) |
| 09:30 - 10:00 |
Lior Pachter: Methods for single cell genomics ↓ TBD (Conference Room San Felipe) |
| 10:00 - 10:30 |
Nelly Sélem Mojica: Genomic Mining methods to identify molecular and genetic variations ↓ TBD (Conference Room San Felipe) |
| 10:30 - 11:00 | Coffee Break (Conference Room San Felipe) |
| 12:00 - 13:00 | Lunch (Restaurant Hotel Hacienda Los Laureles) |
| 13:00 - 17:00 | Free Afternoon (Monte Alban - Oaxaca) |
| 19:00 - 21:00 | Dinner (Restaurant Hotel Hacienda Los Laureles) |
| Friday, December 1 | |
|---|---|
| 07:30 - 09:00 | Breakfast (Restaurant at your assigned hotel) |
| 09:00 - 10:30 |
Participant-driven, parallel group discussion. ↓ Please add topics to the chalk boards, and/or sign up under one or more topics. (Conference Room San Felipe) |
| 10:30 - 11:00 | Coffee Break (Conference Room San Felipe) |
| 11:00 - 12:00 |
Participant-driven, parallel group discussion. ↓ Please add topics to the chalk boards, and/or sign up under one or more topics. (Conference Room San Felipe) |
| 12:00 - 14:00 | Lunch (Restaurant Hotel Hacienda Los Laureles) |
